Guided detailed walkthrough tutorials

Walkthrough DBS electrode reconstructions using LEAD-DBS

Lead-DBS, a detailed walkthrough. Shows functionality of the Lead-DBS toolbox that facilitates reconstruction of deep brain stimulation electrode placement based on postoperative imaging (


Start of Walkthrough: 00:00:00
Organizing Patient Raw Files: 00:00:37
Starting Lead-DBS & Overview: 00:01:28
Renaming converted NIfTI files: 00:02:26
General Processing Strategies in Lead-DBS: 00:03:51
Linking Lead-DBS with 3DSlicer: 00:04:20
The Lead-DBS Preferences File: 00:05:20
Coregistration og Patient Acquisitions: 00:06:03
Exporting Code to Automatize Lead-DBS Processes: 00:07:26
Submitting Jobs from Lead-DBS to a Compute Cluster: 00:08:06
Keeping Track of Methods used in a Study: 00:10:25
Checking Coregistration Results: 00:13:58
Normalizing Patient Results to Template Space: 00:19:41
Checking Normalization Results: 00:23:54
Brainshift Correction: 00:30:27
Working in Batch with Multiple Patients: Approving & Disapproving Results: 00:34:41
Pre-Reconstruction of DBS Electrodes: PaCER: 00:39:30
Localization of DBS Electrodes: CT: 00:40:14
Pre-Reconstruction of DBS Electrodes: TRAC/CORE: 00:48:26
Localization of DBS Electrodes: MRI: 00:51:17
Visualizing Results: 00:55:55
Calculating Volumes of Tissue Activated: 01:00:07
Lead Connectome: 01:05:30
Using Normative Connectomes: Lead Connectome Mapper: 01:07:40
Predicting Patient Outcome using Lead Predict: 01:13:01
Group Analyses in Lead Group: 01:16:03
Further Ressources and Support on 01:32:37

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