Change in orientation of t1 before normalization

[Josue]

Dear experts,

I am using the standalone version of lead dbs. I coregister, normalize, and reconstruct as always and I want to transfer some structures from native space to MNI space using “anchor space to template”. However, the structures were not properly normalized and I realized that the t1 was changed in orientation compared to the my native t1 and therefore the structures in native space were not properly normalized. In tried with “untouched anchor space to template”. I also tried using different normalization methods and it looks like the ANTs method does this with the t1.

Any thoughts

Thank you so much

[Author]

Posts