Hi Larry,
the preprocessing basically follows the pipeline described in
https://www.ncbi.nlm.nih.gov/pubmed/24099851
Motion params are regressed out, slice timing is not corrected for, no scrubbing. WM/CSF signal is regressed out and bandpass-filtering applied within a common window (see paper).
I’d say the rs-fMRI preprocessing pipeline currently is pretty old-school but works for most applications and is really easy to use. Then again also easy to e.g. use fMRIPREP or similar before using lead connectome.
Also we’re much looking for people interested in implementing some additional tools into the pipeline.
Contact me directly if that is interesting.
Best, Andy
