I’m also very interested in making 3D figures. So I did “Export” and got .PLY files. And I opened these files on 3D slicer, but I couldn’t correctly overlay this figure on anatomical nifty file “anat_t1.nii”. The tips of electrodes, which actually exist in both thalamuses are overlayed on posterior lobes.
How can I match coordinate systems of these 2 figures, .PLY file and anatomical nifty image ?
And one other my question is how can I reflect the stimulated area by DBS on .PLY files.
I’m sorry to bother you, but I’m looking forward to hearing from you.