Dear Andy,
thank you for your suggestions and offer to skype! I think I will just plot the structures, store it as .fig and then load it to plot my contacts subsequently into this 3d figure with the usual MATLAB plotting function because we need them to be colored according to a separate dependent variable. The X-Cut view sometimes looks a bit strange (not all nuclei are displayed), I will probably just generate the outlines of the structures in Inkscape once I have the 2D views of the plot.
Thanks again,
Petra
