[canbe]

Hi, Andy

Thank you very much for your quick and kind advice !
I’ll soon try it.

Sincerely, yours

[canbe]

Hi,
I’m also very interested in making 3D figures. So I did “Export” and got .PLY files. And I opened these files on 3D slicer, but I couldn’t correctly overlay this figure on anatomical nifty file “anat_t1.nii”. The tips of electrodes, which actually exist in both thalamuses are overlayed on posterior lobes.
How can I match coordinate systems of these 2 figures, .PLY file and anatomical nifty image ?
And one other my question is how can I reflect the stimulated area by DBS on .PLY files.

I’m sorry to bother you, but I’m looking forward to hearing from you.

Sincerely yours,

[canbe]

Hi, Andy

Thank you for your quick reply.
I’m very sorry for my confusing expression. Speaking briefly, I want nifty images of MRI which have information of DBS electrodes position ( like the .png images of “Write out 2D” menu).
I want to clarify the position of electrodes in MRI images, and try diffusion tensor imaging by using this position as waypoint mask.

I’m sorry to bother you.
Sincerely,

canbe

[canbe]

Hi, Andy

Thank you very much for your quick reply!
I could visualize it in MNI space correctly. And I could visualize it partly in native space, but in native space the sub thalamic nucleus was not shown.

And what is “manual segmentations” ?

Sincerely,

[Author]

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