I downloaded Lead-DBS on Feb 10, 2017 and it was version 1.6.2. I upgraded to version 1.6.3 and have the brainshift correction feature installed. Thanks for the sending the pca.nii file; I placed it in the appropriate subfolder in the lead folder. However, now I get a new error message when assessing structural connectivity using deterministic fibertracking related to no b0.nii file existing; diff.nii, dti.bval, dti.bvec, and anat_t1 files exist in the patient folder.
Running job #1
Running ‘Coregister: Estimate & Reslice’
SPM12: spm_coreg (v6435) 23:57:54 – 01/04/2017
Failed ‘Coregister: Estimate & Reslice’
Error using spm_vol>spm_vol_hdr (line 80)
File “C:\Users\Vinit\Documents\MATLAB\Diffusion-raw\b0.nii” does not exist.
In file “C:\Users\Vinit\Downloads\spm12\spm_vol.m” (v5958), function “spm_vol_hdr” at line 80.
In file “C:\Users\Vinit\Downloads\spm12\spm_vol.m” (v5958), function “spm_vol” at line 61.
In file “C:\Users\Vinit\Downloads\spm12\spm_coreg.m” (v6435), function “spm_coreg” at line 117.
In file “C:\Users\Vinit\Downloads\spm12\config\spm_run_coreg.m” (v5956), function “spm_run_coreg” at line 22.
The following modules did not run:
Failed: Coregister: Estimate & Reslice
Error using MATLABbatch system
Job execution failed. The full log of this run can be found in MATLAB command window, starting with the
lines (look for the line showing the exact #job as displayed in this error message)
Running job #1
Error while evaluating UIControl Callback