ningfeiHi Philip,
First, if you have anat.nii and anat_t1.nii in the subject folder, and you can successfully run into ea_assignpretra, the anat.nii should have been automatically renamed to anat_t2.nii . Could you maybe set a breakpoint at Line 13 in ea_assignpretra, run it again, and paste the value of options.prefs.prenii_searchstring and pfcell here?
Best,
Ningfei
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